Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs4880401 chr10:134314227 A/T 0.000158 111 0 20.27 12.2 KM Plot
LAML rs4881535 chr10:847769 G/A 1.58E-6 108 16.3 16.2 7.13 KM Plot
LAML rs4895821 chr6:127572761 T/A 2.43E-5 110 0.98 16.27 15.2 KM Plot
LAML rs4895822 chr6:127642703 T/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs4895823 chr6:127643398 T/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs4897207 chr6:127605898 C/T 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs4903581 chr14:77852622 G/T 0.000164 111 13.15 20.27 1.02 KM Plot
LAML rs4970371 chr1:893280 G/A 0.000158 110 0 16.17 14.22 KM Plot
LAML rs4970375 chr1:886006 T/C 0.000158 111 0 15.67 14.22 KM Plot
LAML rs4970376 chr1:885699 A/G 0.000158 111 0 15.67 14.22 KM Plot
LAML rs4970377 chr1:885676 C/A 0.000178 109 0 15.67 14.22 KM Plot
LAML rs4970452 chr1:885689 G/A 0.000158 111 0 15.67 14.22 KM Plot
LAML rs4971424 chr2:1053506 G/T 2.41E-8 105 15.17 16.27 0 KM Plot
LAML rs4971425 chr2:1053587 A/G 2.41E-8 105 15.17 16.27 0 KM Plot
LAML rs499778 chr13:21849365 C/T 1.06E-8 109 16.2 13.1 0 KM Plot